PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00573.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 273aa    MW: 31082.8 Da    PI: 4.9881
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00573.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT eEd +lv +++++G g+W+t +++ g+ R +k+c++rw++yl
  Rsa1.0_00573.1_g00012.1 14 KGEWTSEEDRILVAYINEYGLGDWRTLPKRAGLQRYGKSCRLRWLNYL 61
                             799*******************************************97 PP

2Myb_DNA-binding54.33e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T++E++ +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
  Rsa1.0_00573.1_g00012.1  67 RGKFTPQEEDDIIRFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                              89********************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.199961IPR017930Myb domain
SuperFamilySSF466893.02E-2911108IPR009057Homeodomain-like
SMARTSM007179.9E-121363IPR001005SANT/Myb domain
PfamPF002493.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-221568IPR009057Homeodomain-like
CDDcd001674.49E-91661No hitNo description
PROSITE profilePS5129425.26662116IPR017930Myb domain
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.5E-1667111IPR001005SANT/Myb domain
CDDcd001678.33E-1069109No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRTTWLDDD GLKKGEWTSE EDRILVAYIN EYGLGDWRTL PKRAGLQRYG KSCRLRWLNY  60
LRPGIKRGKF TPQEEDDIIR FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRSG  120
IDPMTHEPVV KATSSSTTLS PTLTPSSCSS SFSSTSSARL LNRLAAGISS RKHGLDRIKN  180
VILSKPRQAV EEDKLMISNN EEEEEVTGCF MEIDDNLIST TSLDELLCES TTAFDDYSLV  240
EPYDLYQSDI YHEADDQLDL FLEIHSLGQE DLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382850.0KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649727.11e-146PREDICTED: myb-related protein 308-like
SwissprotO643995e-59MYB34_ARATH; Transcription factor MYB34
SwissprotQ9C9C81e-58MY122_ARATH; Transcription factor MYB122
TrEMBLA0A078C7P61e-146A0A078C7P6_BRANA; BnaC06g35340D protein
STRINGBra015911.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-116myb domain protein 95